wip: move all application files into application folder

quad/sw/modular_quad_pid/.clean_app.tcl

+cd ..
+sdk set_workspace .
+sdk clean_project -type app -name modular_quad_pid

quad/sw/modular_quad_pid/clean.sh

+#!/bin/bash
+
+source /remote/Xilinx/2015.4/SDK/2015.4/settings64.sh
+
+echo "Cleaning modular_quad_pid"
+
+xsct .clean_app.tcl || exit 1

quad/sw/modular_quad_pid/src/application/commands.c

+../../../../../groundStation/src/backend/commands.c
\ No newline at end of file

quad/sw/modular_quad_pid/src/application/commands.h

+../../../../../groundStation/src/backend/commands.h
\ No newline at end of file

quad/sw/modular_quad_pid/src/communication.c → quad/sw/modular_quad_pid/src/application/communication.c

 #include "communication.h"
-#include "hardware/hw_iface.h"
 
 #define INTC		XScuGic
 #define COMM_UART_DEVICE_ID		XPAR_PS7_UART_0_DEVICE_ID

quad/sw/modular_quad_pid/src/communication.h → quad/sw/modular_quad_pid/src/application/communication.h

@@ -5,7 +5,7 @@
 #include "mio7_led.h"
 #include "timer.h"
 #include "commands.h"
-#include "hardware/hw_iface.h"
+#include "hw_iface.h"
 
 int initUartComms();
 void process_received(modular_structs_t *structs);

quad/sw/modular_quad_pid/src/application/computation_graph.c

+../../../../computation_graph/src/computation_graph.c
\ No newline at end of file

quad/sw/modular_quad_pid/src/application/computation_graph.h

+../../../../computation_graph/src/computation_graph.h
\ No newline at end of file